Updates a LandsepiParams object with croptypes and their composition with regard to cultivar proportions. Note that landscape and cultivar parameters may be required if not all information is present to set croptypes.

setCroptypes(params, dfCroptypes)

Arguments

params

a LandsepiParams Object.

dfCroptypes

a data.frame containing cultivar proportions in each croptype (see details). It can be generated manually, or initialised with loadCroptypes and later updated with allocateCroptypeCultivars.

Value

a LandsepiParams object

Details

The data.frame for cultivar allocations into croptypes must take this format (example):

croptypeIDcroptypeNamecultivarName1cultivarName2...
0"cropt1"10...
1"cropt2"0.50.5...

croptypeIDs must start at 0 and match with values from landscape "croptypeID" layer with feature year_X. Cultivars names have to match cultivar names in the cultivars data.frame.

See also

Examples

if (FALSE) {
simul_params <- createSimulParams()
cultivar1 <- loadCultivar(name = "Susceptible", type = "growingHost")
cultivar2 <- loadCultivar(name = "Resistant1", type = "growingHost")
cultivar3 <- loadCultivar(name = "Resistant2", type = "growingHost")
cultivars <- data.frame(rbind(cultivar1, cultivar2, cultivar3), stringsAsFactors = FALSE)
simul_params <- setCultivars(simul_params, cultivars)
croptypes <- loadCroptypes(simul_params, names = c("Susceptible crop", "Mixture"))
croptypes <- allocateCroptypeCultivars(croptypes, "Susceptible crop", "Susceptible")
croptypes <- allocateCroptypeCultivars(croptypes, "Mixture", c("Resistant1", "Resistant2"))
simul_params <- setCroptypes(simul_params, croptypes)
simul_params@Croptypes
}