Allocate genes to a cultivar

Updates a LandsepiParams object with, for a given cultivar, the list of genes it carries

allocateCultivarGenes(
  params,
  cultivarName,
  listGenesNames = c(""),
  force.clean = FALSE
)

Arguments

params

a LandsepiParams object.

cultivarName

the name of the cultivar to be allocated.

listGenesNames

the names of the genes the cultivar carries

force.clean

force to clean previous allocated genes to all cultivars

Value

a LandsepiParams object

See also

setGenes, setCultivars

Examples

if (FALSE) {
simul_params <- createSimulParams()
gene1 <- loadGene(name = "MG 1", type = "majorGene")
gene2 <- loadGene(name = "MG 2", type = "majorGene")
genes <- data.frame(rbind(gene1, gene2), stringsAsFactors = FALSE)
simul_params <- setGenes(simul_params, genes)
cultivar1 <- loadCultivar(name = "Susceptible", type = "growingHost")
cultivar2 <- loadCultivar(name = "Resistant", type = "growingHost")
cultivars <- data.frame(rbind(cultivar1, cultivar2), stringsAsFactors = FALSE)
simul_params <- setCultivars(simul_params, cultivars)
simul_params <- allocateCultivarGenes(simul_params, "Resistant", c("MG 1", "MG 2"))
simul_params@CultivarsGenes
}