• Added Inoculum strategies (Thanks to Manon)
  • Added Sexual Reproduction model (Thanks to Marta)

  • Update Shiny interface

  • Added a NEWS.md file to track changes to the package.

  • [breaking change] loadDispersalPathogen() now return a list of two matrix, the first for clonal and the second for sexual reproductions.

  • [breaking change] Changed parameterisation of inoculum to allow specific spatial location and genetic composition of inoculum
  • Changed parameterisation of pathogen survival probability to allow different probabilities for different croptypes and years
  • Added two types of fitness costs paid by pathogens adapted to resistance (on all hosts, or only for unnecessary virulence)
  • Help parameterisation of treatments with loadTreatment()